Variant report

Variant	rs60541198
Chromosome Location	chr15:74153419-74153420
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16958382	0.92[ASN][1000 genomes]
rs16958390	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16958415	0.83[ASN][1000 genomes]
rs1869177	0.91[ASN][1000 genomes]
rs2290346	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4528522	0.83[ASN][1000 genomes]
rs57180956	0.92[ASN][1000 genomes]
rs58309771	0.86[ASN][1000 genomes]
rs58443873	0.90[ASN][1000 genomes]
rs58594871	0.94[ASN][1000 genomes]
rs60302365	0.94[ASN][1000 genomes]
rs61661320	0.93[ASN][1000 genomes]
rs7178137	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7178413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7179621	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs878322	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74149400-74154400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:74149400-74154600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:74149600-74154400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:74149600-74158600	Weak transcription	Right Atrium	heart
5	chr15:74152000-74158400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74153200-74154000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:74153200-74154600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links