Variant report

Variant	rs3935254
Chromosome Location	chr15:74191588-74191589
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74191360..74193301-chr15:74195249..74198218,2	MCF-7	breast:
2	chr15:74190385..74192621-chr15:74220750..74222967,2	MCF-7	breast:
3	chr15:74189981..74192337-chr15:74200765..74203588,2	MCF-7	breast:
4	chr15:74185254..74189144-chr15:74189847..74193524,3	K562	blood:
5	chr15:74191166..74196987-chr15:74197125..74201109,6	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11855607	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16958415	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2084851	0.94[CHB][hapmap]
rs2290346	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs4445847	0.93[CHB][hapmap]
rs4528522	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58309771	0.80[ASN][1000 genomes]
rs59778825	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60856646	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71434216	0.90[ASN][1000 genomes]
rs7170291	0.87[CHB][hapmap];0.91[YRI][hapmap]
rs7179978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8029844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8035582	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs878322	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74187200-74192600	Weak transcription	Spleen	Spleen
2	chr15:74188200-74191600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr15:74188200-74191600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:74188200-74191600	Weak transcription	Fetal Brain Male	brain
5	chr15:74188400-74191600	Weak transcription	Fetal Brain Female	brain
6	chr15:74188800-74204000	Weak transcription	Right Atrium	heart
7	chr15:74189000-74193200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:74189000-74193800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:74189200-74191600	Enhancers	NHDF-Ad	bronchial
10	chr15:74189200-74193000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:74189200-74193200	Enhancers	HSMMtube	muscle
12	chr15:74189400-74193200	Enhancers	NH-A	brain
13	chr15:74190000-74203400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:74190600-74192200	Weak transcription	Esophagus	oesophagus
15	chr15:74190600-74192800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:74190600-74193000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:74190600-74194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:74190800-74192400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:74190800-74192400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:74190800-74192400	Weak transcription	Placenta	Placenta
21	chr15:74191400-74191600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr15:74191400-74191600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:74191400-74191800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:74191400-74191800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:74191400-74192000	Enhancers	NHLF	lung
26	chr15:74191400-74192600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:74191400-74192800	Enhancers	Brain Germinal Matrix	brain
28	chr15:74191400-74192800	Enhancers	Stomach Smooth Muscle	stomach
29	chr15:74191400-74193000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:74191400-74193000	Enhancers	HSMM	muscle
31	chr15:74191400-74193000	Enhancers	Osteobl	bone

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