Variant report

Variant	rs11862421
Chromosome Location	chr16:80181833-80181834
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1072830	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11640834	1.00[ASN][1000 genomes]
rs11643333	1.00[ASN][1000 genomes]
rs11647154	1.00[ASN][1000 genomes]
rs11860810	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11863400	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12921389	1.00[CHB][hapmap]
rs12926656	1.00[ASN][1000 genomes]
rs1842022	1.00[ASN][1000 genomes]
rs34040363	1.00[ASN][1000 genomes]
rs36086210	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3823	1.00[ASN][1000 genomes]
rs7200669	1.00[ASN][1000 genomes]
rs72815871	1.00[ASN][1000 genomes]
rs8043982	1.00[ASN][1000 genomes]
rs8049125	1.00[ASN][1000 genomes]
rs9923556	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11862421	NUDT7	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80180600-80182000	Enhancers	Fetal Muscle Leg	muscle
2	chr16:80180800-80182000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:80180800-80182000	Enhancers	Fetal Stomach	stomach
4	chr16:80181000-80185200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr16:80181200-80184600	Weak transcription	NH-A	brain
6	chr16:80181400-80182200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:80181400-80184400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr16:80181600-80182400	Enhancers	HSMM	muscle
9	chr16:80181600-80182400	Enhancers	HSMMtube	muscle
10	chr16:80181800-80182000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr16:80181800-80182000	Enhancers	NHDF-Ad	bronchial
12	chr16:80181800-80184400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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