Variant report

Variant	rs11868162
Chromosome Location	chr17:66467732-66467733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11870630	0.85[EUR][1000 genomes]
rs12452782	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2041980	0.85[EUR][1000 genomes]
rs57713835	0.86[EUR][1000 genomes]
rs62085931	0.81[ASN][1000 genomes]
rs62085940	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7214330	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66454600-66470400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:66456800-66470400	Weak transcription	Right Ventricle	heart
3	chr17:66460400-66470400	Weak transcription	Ovary	ovary
4	chr17:66462800-66470400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr17:66464200-66468600	Weak transcription	Left Ventricle	heart
6	chr17:66465200-66467800	Weak transcription	Fetal Muscle Leg	muscle
7	chr17:66466200-66468600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr17:66467000-66467800	Enhancers	HepG2	liver
9	chr17:66467600-66467800	Enhancers	Right Atrium	heart
10	chr17:66467600-66468600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr17:66467600-66469800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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