Variant report

Variant	rs62085940
Chromosome Location	chr17:66470134-66470135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11868162	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11870630	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12452782	0.86[EUR][1000 genomes]
rs2041980	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57006335	0.90[ASN][1000 genomes]
rs57713835	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57970111	0.90[ASN][1000 genomes]
rs7207968	0.90[ASN][1000 genomes]
rs7214330	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66454600-66470400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:66456800-66470400	Weak transcription	Right Ventricle	heart
3	chr17:66460400-66470400	Weak transcription	Ovary	ovary
4	chr17:66462800-66470400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr17:66467800-66487000	Weak transcription	Right Atrium	heart
6	chr17:66468600-66470400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr17:66469600-66470400	Weak transcription	Fetal Muscle Leg	muscle
8	chr17:66470000-66470400	Flanking Active TSS	Fetal Heart	heart
9	chr17:66470000-66470400	Enhancers	Hela-S3	cervix
10	chr17:66470000-66470400	Enhancers	HepG2	liver
11	chr17:66470000-66471600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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