Variant report

Variant	rs7207968
Chromosome Location	chr17:66487513-66487514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:66480053..66482691-chr17:66486689..66489527,2	K562	blood:
2	chr17:66486129..66489864-chr17:66505965..66510014,4	MCF-7	breast:
3	chr17:66486234..66488484-chr17:66491556..66493277,2	MCF-7	breast:
4	chr17:66482801..66484982-chr17:66486873..66489419,2	K562	blood:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11870630	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16972981	0.90[EUR][1000 genomes]
rs16973011	0.84[EUR][1000 genomes]
rs2041980	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55706908	0.90[EUR][1000 genomes]
rs56133934	0.90[EUR][1000 genomes]
rs56163561	0.90[EUR][1000 genomes]
rs57006335	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57713835	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57970111	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59223374	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60531444	0.90[EUR][1000 genomes]
rs62085940	0.90[ASN][1000 genomes]
rs7214330	0.88[ASN][1000 genomes]
rs72847769	0.90[EUR][1000 genomes]
rs72847771	0.90[EUR][1000 genomes]
rs72847774	0.90[EUR][1000 genomes]
rs72847775	0.90[EUR][1000 genomes]
rs72847778	0.90[EUR][1000 genomes]
rs8905	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66478400-66487600	Weak transcription	Gastric	stomach
2	chr17:66480800-66490600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr17:66481400-66488200	Weak transcription	Brain Hippocampus Middle	brain
4	chr17:66482600-66487800	Weak transcription	Liver	Liver
5	chr17:66484400-66487600	Weak transcription	Esophagus	oesophagus
6	chr17:66484600-66487600	Weak transcription	HepG2	liver
7	chr17:66485000-66487800	Weak transcription	Fetal Thymus	thymus
8	chr17:66485600-66488200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr17:66486000-66488000	Enhancers	Adipose Nuclei	Adipose
10	chr17:66486000-66488200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr17:66486000-66488200	Enhancers	Primary B cells from peripheral blood	blood
12	chr17:66486200-66488200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr17:66486200-66488200	Enhancers	Psoas Muscle	Psoas
14	chr17:66486200-66488400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr17:66486200-66488600	Enhancers	GM12878-XiMat	blood
16	chr17:66486200-66488800	Enhancers	Primary B cells from cord blood	blood
17	chr17:66486200-66488800	Enhancers	Fetal Muscle Leg	muscle
18	chr17:66486200-66488800	Enhancers	Lung	lung
19	chr17:66486400-66487600	Weak transcription	Fetal Lung	lung
20	chr17:66486400-66487600	Weak transcription	Pancreas	Pancrea
21	chr17:66486400-66488000	Enhancers	Colonic Mucosa	Colon
22	chr17:66486400-66488600	Enhancers	Spleen	Spleen
23	chr17:66486400-66488800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr17:66486400-66488800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr17:66486600-66487600	Weak transcription	Left Ventricle	heart
26	chr17:66486800-66488000	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr17:66486800-66488200	Enhancers	Primary hematopoietic stem cells	blood
28	chr17:66486800-66488600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr17:66487000-66488000	Enhancers	Duodenum Mucosa	Duodenum
30	chr17:66487000-66488400	Enhancers	Ovary	ovary
31	chr17:66487000-66488400	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr17:66487000-66488400	Enhancers	Right Atrium	heart
33	chr17:66487000-66488600	Enhancers	Brain Substantia Nigra	brain
34	chr17:66487000-66488800	Enhancers	Placenta	Placenta
35	chr17:66487000-66489600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr17:66487200-66488000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr17:66487200-66493800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr17:66487400-66487800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr17:66487400-66489000	Enhancers	Fetal Muscle Trunk	muscle

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