Variant report

Variant	rs11870630
Chromosome Location	chr17:66476015-66476016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11868162	0.85[EUR][1000 genomes]
rs12452782	0.80[EUR][1000 genomes]
rs16972981	0.84[AMR][1000 genomes]
rs2041980	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55706908	0.84[AMR][1000 genomes]
rs56163561	0.84[AMR][1000 genomes]
rs57006335	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57713835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57970111	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59223374	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62085940	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7207968	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7214330	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847769	0.84[AMR][1000 genomes]
rs72847771	0.84[AMR][1000 genomes]
rs72847775	0.84[AMR][1000 genomes]
rs72847778	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
2	nsv522271	chr17:66475586-66478018	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66467800-66487000	Weak transcription	Right Atrium	heart
2	chr17:66470800-66478000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:66471600-66477000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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