Variant report

Variant	rs16972981
Chromosome Location	chr17:66495684-66495685
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11868368	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11870630	0.84[AMR][1000 genomes]
rs16973011	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2041980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs55706908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133934	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56163561	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57006335	0.90[EUR][1000 genomes]
rs57713835	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57970111	0.89[EUR][1000 genomes]
rs59223374	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60531444	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207968	0.90[EUR][1000 genomes]
rs72847769	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847771	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72847774	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847775	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847778	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8905	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66493400-66495800	Enhancers	Primary B cells from peripheral blood	blood
2	chr17:66493800-66495800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr17:66494000-66496000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr17:66494400-66496000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr17:66494600-66503600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:66495000-66495800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr17:66495000-66495800	Enhancers	Adipose Nuclei	Adipose
8	chr17:66495200-66497800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr17:66495400-66496400	Enhancers	GM12878-XiMat	blood
10	chr17:66495400-66496600	Enhancers	Primary B cells from cord blood	blood
11	chr17:66495600-66497200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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