Variant report

Variant	rs59223374
Chromosome Location	chr17:66489658-66489659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:66486129..66489864-chr17:66505965..66510014,4	MCF-7	breast:
2	chr17:66479120..66480633-chr17:66487594..66490135,2	MCF-7	breast:
3	chr17:66489499..66498114-chr17:66506415..66512369,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11868368	0.85[ASN][1000 genomes]
rs11870630	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16972981	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16973011	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2041980	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55706908	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56133934	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56163561	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57006335	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57713835	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57970111	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60531444	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7207968	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72847769	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72847771	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72847774	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72847775	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72847778	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8905	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66480800-66490600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr17:66487200-66493800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:66488200-66493400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr17:66488200-66493800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr17:66488200-66494600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:66488400-66490000	Enhancers	Adipose Nuclei	Adipose
7	chr17:66488400-66493800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr17:66488400-66494400	Weak transcription	Ovary	ovary
9	chr17:66488400-66494600	Weak transcription	Gastric	stomach
10	chr17:66488600-66493200	Weak transcription	GM12878-XiMat	blood
11	chr17:66488600-66493800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:66488600-66493800	Weak transcription	Spleen	Spleen
13	chr17:66488800-66490400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr17:66488800-66493400	Weak transcription	Primary B cells from cord blood	blood
15	chr17:66488800-66493800	Weak transcription	Colonic Mucosa	Colon
16	chr17:66488800-66493800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr17:66488800-66494000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr17:66488800-66494200	Weak transcription	Pancreas	Pancrea
19	chr17:66489000-66492600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr17:66489200-66489800	Enhancers	Fetal Heart	heart
21	chr17:66489200-66489800	Enhancers	Fetal Muscle Leg	muscle
22	chr17:66489400-66490000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr17:66489400-66490000	Enhancers	Fetal Muscle Trunk	muscle
24	chr17:66489400-66494200	Weak transcription	Left Ventricle	heart
25	chr17:66489400-66494600	Weak transcription	Right Atrium	heart
26	chr17:66489600-66489800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr17:66489600-66493800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr17:66489600-66494600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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