Variant report

Variant	rs11870522
Chromosome Location	chr17:17618915-17618916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17589035..17591653-chr17:17618320..17620668,2	K562	blood:
2	chr17:17615643..17617150-chr17:17618126..17620585,2	K562	blood:
3	chr17:17588749..17591653-chr17:17617007..17620668,3	K562	blood:
4	chr17:17616640..17621163-chr17:17622040..17627772,6	K562	blood:
5	chr17:17610633..17612841-chr17:17617873..17620812,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2229590	1.00[AMR][1000 genomes]
rs45570037	1.00[AMR][1000 genomes]
rs4997327	1.00[AMR][1000 genomes]
rs7214844	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv907752	chr17:17569012-17750907	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
6	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
7	nsv907753	chr17:17573539-17747289	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
8	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
9	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
11	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
12	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv543241	chr17:17596222-17703059	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
17	nsv1062361	chr17:17598407-17746899	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
18	nsv543243	chr17:17598407-17746899	Genic enhancers Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17608600-17620400	Weak transcription	Dnd41	blood
2	chr17:17613200-17620200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:17613400-17621600	Weak transcription	Thymus	Thymus
4	chr17:17613600-17624400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:17613800-17619000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr17:17616000-17620600	Weak transcription	Fetal Lung	lung
7	chr17:17616000-17624800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr17:17616000-17625000	Weak transcription	Brain Germinal Matrix	brain
9	chr17:17616200-17625200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:17616200-17642000	Weak transcription	K562	blood
11	chr17:17616800-17619000	Enhancers	Fetal Heart	heart
12	chr17:17617000-17622000	Enhancers	Fetal Thymus	thymus
13	chr17:17617200-17619200	Enhancers	Lung	lung
14	chr17:17617200-17620600	Enhancers	Pancreas	Pancrea
15	chr17:17617200-17620600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr17:17617200-17620800	Enhancers	Spleen	Spleen
17	chr17:17617200-17621000	Enhancers	Right Ventricle	heart
18	chr17:17617400-17620400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr17:17617600-17619800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:17617600-17619800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr17:17617600-17619800	Weak transcription	Ovary	ovary
22	chr17:17617600-17620400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr17:17617600-17620400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr17:17617600-17620600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr17:17617600-17623400	Weak transcription	Colonic Mucosa	Colon
26	chr17:17617600-17625800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr17:17617800-17619000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr17:17617800-17619200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:17617800-17619400	Strong transcription	Fetal Intestine Small	intestine
30	chr17:17617800-17619600	Weak transcription	Fetal Brain Male	brain
31	chr17:17617800-17625200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr17:17618000-17619000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr17:17618000-17619600	Genic enhancers	Fetal Muscle Trunk	muscle
34	chr17:17618000-17619800	Weak transcription	Fetal Intestine Large	intestine
35	chr17:17618000-17621000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr17:17618000-17621800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr17:17618000-17622400	Weak transcription	HMEC	breast
38	chr17:17618000-17623200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr17:17618000-17623400	Weak transcription	Hela-S3	cervix
40	chr17:17618200-17619800	Weak transcription	Esophagus	oesophagus
41	chr17:17618200-17620000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr17:17618200-17620200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr17:17618200-17620400	Weak transcription	GM12878-XiMat	blood
44	chr17:17618200-17620800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr17:17618200-17621200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr17:17618200-17621600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr17:17618200-17622400	Weak transcription	NHEK	skin
48	chr17:17618200-17622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr17:17618200-17624800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr17:17618200-17625400	Weak transcription	Brain Substantia Nigra	brain

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