Variant report

Variant	rs7214844
Chromosome Location	chr17:17831176-17831177
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17830467..17833990-chr17:17840176..17843911,4	MCF-7	breast:
2	chr17:17822649..17827287-chr17:17828107..17833962,6	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1006770	1.00[AMR][1000 genomes]
rs11868625	1.00[AMR][1000 genomes]
rs11870522	1.00[AMR][1000 genomes]
rs2229590	1.00[AMR][1000 genomes]
rs2230317	1.00[AMR][1000 genomes]
rs45570037	1.00[AMR][1000 genomes]
rs4997327	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8072048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
5	nsv482879	chr17:17802463-17989273	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17810800-17838400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:17811400-17838400	Weak transcription	Primary T cells from cord blood	blood
3	chr17:17814800-17833200	Weak transcription	Aorta	Aorta
4	chr17:17817600-17831600	Weak transcription	Fetal Brain Female	brain
5	chr17:17817800-17838200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr17:17822000-17836600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr17:17823200-17838000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr17:17823200-17838200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr17:17823400-17836400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr17:17823400-17838200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:17824600-17831200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr17:17824800-17838200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:17825000-17837600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:17826000-17832400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr17:17826200-17831600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr17:17826200-17833600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr17:17826200-17837800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:17826200-17838400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr17:17826200-17838400	Weak transcription	Small Intestine	intestine
20	chr17:17826400-17831400	Weak transcription	Brain Germinal Matrix	brain
21	chr17:17826400-17831600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr17:17826400-17831600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr17:17826400-17831600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr17:17826400-17831600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr17:17826400-17831600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr17:17826400-17831600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr17:17826400-17831600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr17:17826400-17831600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr17:17826400-17831600	Weak transcription	HUVEC	blood vessel
30	chr17:17826400-17831800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr17:17826400-17831800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr17:17826400-17831800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr17:17826400-17831800	Weak transcription	Spleen	Spleen
34	chr17:17826400-17832000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr17:17826400-17832000	Weak transcription	Adipose Nuclei	Adipose
36	chr17:17826400-17833000	Weak transcription	Fetal Kidney	kidney
37	chr17:17826600-17831600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr17:17826600-17831800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr17:17826600-17832000	Weak transcription	Placenta	Placenta
40	chr17:17826600-17834400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr17:17826600-17838000	Weak transcription	Hela-S3	cervix
42	chr17:17827000-17831600	Enhancers	HSMM	muscle
43	chr17:17827000-17831800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr17:17827000-17838400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr17:17827200-17840400	Weak transcription	Colon Smooth Muscle	Colon
46	chr17:17828000-17835200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr17:17828200-17861000	Weak transcription	Primary B cells from cord blood	blood
48	chr17:17828400-17831600	Weak transcription	HMEC	breast
49	chr17:17828400-17831600	Weak transcription	NHDF-Ad	bronchial
50	chr17:17828400-17831800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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