Variant report

Variant	rs1187599
Chromosome Location	chr14:55060821-55060822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1187591	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1187593	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1187595	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1202668	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1211170	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2763567	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs942604	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55036200-55073000	Weak transcription	Pancreas	Pancrea
2	chr14:55043600-55064600	Weak transcription	K562	blood
3	chr14:55045000-55066800	Weak transcription	Brain Anterior Caudate	brain
4	chr14:55045200-55066600	Weak transcription	Fetal Stomach	stomach
5	chr14:55047000-55072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:55047200-55072800	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:55047600-55064400	Weak transcription	Aorta	Aorta
8	chr14:55048200-55072800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr14:55049400-55067000	Weak transcription	Ovary	ovary
10	chr14:55050600-55069600	Weak transcription	Liver	Liver
11	chr14:55057000-55091000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:55058000-55066800	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:55058000-55066800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:55058200-55073000	Weak transcription	Brain Substantia Nigra	brain
15	chr14:55058800-55061200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:55058800-55063200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:55058800-55067400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:55058800-55073000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:55059200-55073000	Weak transcription	Spleen	Spleen
20	chr14:55059800-55061400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr14:55059800-55062000	Enhancers	NHDF-Ad	bronchial
22	chr14:55060000-55061000	Flanking Active TSS	HUVEC	blood vessel
23	chr14:55060000-55061400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr14:55060000-55061600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:55060000-55061600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:55060000-55061600	Enhancers	Fetal Heart	heart
27	chr14:55060200-55061000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:55060200-55061000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr14:55060200-55061200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr14:55060200-55061200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr14:55060200-55061400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:55060200-55061400	Enhancers	Hela-S3	cervix
33	chr14:55060200-55061400	Enhancers	HSMM	muscle
34	chr14:55060200-55061800	Flanking Active TSS	NHEK	skin
35	chr14:55060200-55062000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:55060200-55062000	Enhancers	NHLF	lung
37	chr14:55060200-55062000	Enhancers	Osteobl	bone
38	chr14:55060400-55061200	Enhancers	Primary B cells from peripheral blood	blood
39	chr14:55060400-55061200	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr14:55060400-55061200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:55060400-55061200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:55060400-55061200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:55060400-55061200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:55060400-55061200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr14:55060400-55061200	Enhancers	Fetal Thymus	thymus
46	chr14:55060400-55061200	Enhancers	Placenta Amnion	Placenta Amnion
47	chr14:55060400-55061200	Enhancers	Right Atrium	heart
48	chr14:55060400-55061200	Enhancers	A549	lung
49	chr14:55060400-55061400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:55060400-55061400	Enhancers	Colon Smooth Muscle	Colon

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