Variant report

Variant	rs2763567
Chromosome Location	chr14:55056020-55056021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55041418..55044000-chr14:55055293..55056952,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1187586	0.86[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.81[ASN][1000 genomes]
rs1187587	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1187591	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1187593	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1187595	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1187599	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1202668	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1211170	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942604	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55036200-55073000	Weak transcription	Pancreas	Pancrea
2	chr14:55036400-55058200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:55037000-55058600	Weak transcription	Spleen	Spleen
4	chr14:55041000-55058400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:55041400-55056800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:55041400-55057600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:55043600-55064600	Weak transcription	K562	blood
8	chr14:55044000-55057800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:55044400-55056800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:55044400-55058000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:55044800-55056800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:55044800-55057800	Weak transcription	Brain Substantia Nigra	brain
13	chr14:55045000-55056800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:55045000-55057200	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:55045000-55060800	Weak transcription	Adipose Nuclei	Adipose
16	chr14:55045000-55066800	Weak transcription	Brain Anterior Caudate	brain
17	chr14:55045200-55056200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:55045200-55056600	Weak transcription	HSMMtube	muscle
19	chr14:55045200-55066600	Weak transcription	Fetal Stomach	stomach
20	chr14:55047000-55056400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr14:55047000-55057200	Weak transcription	Lung	lung
22	chr14:55047000-55072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:55047200-55056600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr14:55047200-55056800	Weak transcription	A549	lung
25	chr14:55047200-55072800	Weak transcription	Brain Hippocampus Middle	brain
26	chr14:55047600-55056800	Weak transcription	Right Ventricle	heart
27	chr14:55047600-55064400	Weak transcription	Aorta	Aorta
28	chr14:55048200-55056200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:55048200-55072800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr14:55048400-55057000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:55048800-55056200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr14:55049200-55056200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:55049400-55056600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:55049400-55067000	Weak transcription	Ovary	ovary
35	chr14:55049800-55056800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:55049800-55056800	Weak transcription	Left Ventricle	heart
37	chr14:55049800-55057000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:55050600-55069600	Weak transcription	Liver	Liver
39	chr14:55051200-55057800	Weak transcription	Colon Smooth Muscle	Colon
40	chr14:55052600-55057400	Weak transcription	HUVEC	blood vessel
41	chr14:55052800-55057800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr14:55054200-55056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr14:55055200-55056200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:55055200-55059000	Enhancers	NHDF-Ad	bronchial
45	chr14:55055200-55059200	Enhancers	NHEK	skin
46	chr14:55055400-55058800	Enhancers	HSMM	muscle
47	chr14:55055400-55059400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:55055600-55058200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:55055600-55058400	Enhancers	Osteobl	bone
50	chr14:55055600-55059000	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links