Variant report

Variant	rs942604
Chromosome Location	chr14:55058707-55058708
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55045663..55048624-chr14:55058261..55060394,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1187586	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1187587	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1187591	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1187593	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1187595	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1187599	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1202668	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1211170	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2763567	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55036200-55073000	Weak transcription	Pancreas	Pancrea
2	chr14:55043600-55064600	Weak transcription	K562	blood
3	chr14:55045000-55060800	Weak transcription	Adipose Nuclei	Adipose
4	chr14:55045000-55066800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:55045200-55066600	Weak transcription	Fetal Stomach	stomach
6	chr14:55047000-55072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:55047200-55072800	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:55047600-55064400	Weak transcription	Aorta	Aorta
9	chr14:55048200-55072800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr14:55049400-55067000	Weak transcription	Ovary	ovary
11	chr14:55050600-55069600	Weak transcription	Liver	Liver
12	chr14:55055200-55059000	Enhancers	NHDF-Ad	bronchial
13	chr14:55055200-55059200	Enhancers	NHEK	skin
14	chr14:55055400-55058800	Enhancers	HSMM	muscle
15	chr14:55055400-55059400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:55055600-55059000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr14:55055600-55059200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:55055600-55059200	Enhancers	NHLF	lung
19	chr14:55055600-55059600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr14:55055800-55059000	Enhancers	NH-A	brain
21	chr14:55055800-55059200	Enhancers	Fetal Heart	heart
22	chr14:55055800-55059200	Enhancers	HMEC	breast
23	chr14:55056000-55059000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:55056200-55058800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:55056200-55059000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:55056600-55058800	Enhancers	HSMMtube	muscle
27	chr14:55056600-55060800	Weak transcription	HepG2	liver
28	chr14:55056800-55058800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr14:55056800-55058800	Enhancers	Left Ventricle	heart
30	chr14:55056800-55059000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:55056800-55060400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:55056800-55060800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr14:55057000-55059000	Enhancers	Right Atrium	heart
34	chr14:55057000-55059200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:55057000-55091000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr14:55057400-55058800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:55057400-55059600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:55057400-55060000	Enhancers	HUVEC	blood vessel
39	chr14:55057600-55058800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:55057600-55059000	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr14:55057600-55060400	Weak transcription	Right Ventricle	heart
42	chr14:55057600-55060400	Weak transcription	A549	lung
43	chr14:55057800-55058800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr14:55057800-55058800	Enhancers	Colon Smooth Muscle	Colon
45	chr14:55057800-55059200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:55058000-55058800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:55058000-55059000	Enhancers	Brain Germinal Matrix	brain
48	chr14:55058000-55060600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:55058000-55066800	Weak transcription	Fetal Muscle Leg	muscle
50	chr14:55058000-55066800	Weak transcription	Stomach Smooth Muscle	stomach

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