Variant report

Variant	rs1187783
Chromosome Location	chr1:213544826-213544827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10746441	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1107412	0.91[EUR][1000 genomes]
rs11120115	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11120116	0.84[ASN][1000 genomes]
rs11120117	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1187784	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211362	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1875765	0.91[EUR][1000 genomes]
rs2033595	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2033597	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2359700	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4655360	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6694226	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs965779	0.90[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213540600-213545200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:213540600-213548000	Weak transcription	Right Atrium	heart
3	chr1:213542000-213545000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:213542000-213545200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:213542200-213554000	Weak transcription	Brain Germinal Matrix	brain
6	chr1:213542400-213546600	Enhancers	Liver	Liver
7	chr1:213543200-213545000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:213543200-213555000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:213543400-213554600	Weak transcription	Pancreas	Pancrea
10	chr1:213544200-213547800	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:213544800-213546200	Flanking Active TSS	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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