Variant report

Variant	rs4655360
Chromosome Location	chr1:213555691-213555692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10746441	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11120115	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11120116	0.93[ASN][1000 genomes]
rs11120117	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11120119	0.87[EUR][1000 genomes]
rs11120120	0.82[EUR][1000 genomes]
rs1187783	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1187784	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1211362	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2033595	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2033597	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2359700	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6694226	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74142113	0.82[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4655360	PROX1	cis	cerebellum	SCAN
rs4655360	CENPF	cis	parietal	SCAN
rs4655360	SLC17A4	trans	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213550600-213556600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:213552400-213555800	Weak transcription	HepG2	liver
3	chr1:213554200-213556400	Enhancers	Fetal Heart	heart
4	chr1:213554600-213555800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:213554800-213555800	Enhancers	Fetal Lung	lung
6	chr1:213555000-213555800	Flanking Active TSS	Brain Germinal Matrix	brain
7	chr1:213555400-213555800	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr1:213555400-213555800	Flanking Active TSS	Fetal Brain Male	brain
9	chr1:213555400-213556200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:213555400-213556200	Enhancers	Left Ventricle	heart
11	chr1:213555400-213556600	Enhancers	Fetal Muscle Leg	muscle
12	chr1:213555400-213567000	Weak transcription	Right Atrium	heart
13	chr1:213555600-213555800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr1:213555600-213556000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr1:213555600-213556200	Enhancers	Fetal Brain Female	brain
16	chr1:213555600-213556800	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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