Variant report

Variant	rs11881837
Chromosome Location	chr19:39358860-39358861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:39358835..39360669-chr19:39419879..39421985,2	K562	blood:
2	chr19:39339409..39344372-chr19:39356868..39363816,11	MCF-7	breast:
3	chr19:39337733..39344793-chr19:39358054..39362711,15	MCF-7	breast:
4	chr19:39340592..39344706-chr19:39357882..39361932,6	K562	blood:
5	chr19:39358481..39361924-chr19:39367868..39369637,3	K562	blood:

Variant related genes	Relation type
ENSG00000104835	Chromatin interaction
ENSG00000104824	Chromatin interaction
ENSG00000187994	Chromatin interaction
ENSG00000128626	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10411224	1.00[EUR][1000 genomes]
rs10415871	1.00[EUR][1000 genomes]
rs17883377	1.00[EUR][1000 genomes]
rs28414024	1.00[EUR][1000 genomes]
rs28698570	1.00[EUR][1000 genomes]
rs28842622	1.00[EUR][1000 genomes]
rs58287865	1.00[EUR][1000 genomes]
rs7250688	1.00[EUR][1000 genomes]
rs73545566	1.00[EUR][1000 genomes]
rs73930246	1.00[EUR][1000 genomes]
rs73933042	1.00[EUR][1000 genomes]
rs73933047	1.00[EUR][1000 genomes]
rs8103029	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv1837023	chr19:39190588-39425722	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv911673	chr19:39335274-39365401	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	esv1798153	chr19:39338663-39399277	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39343600-39359800	Weak transcription	Small Intestine	intestine
2	chr19:39348600-39359600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:39349400-39359800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:39353400-39359600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr19:39353400-39363800	Weak transcription	HSMMtube	muscle
6	chr19:39353600-39359200	Weak transcription	Esophagus	oesophagus
7	chr19:39353600-39359600	Weak transcription	Liver	Liver
8	chr19:39353600-39359600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr19:39353600-39359800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr19:39353600-39359800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr19:39353600-39359800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr19:39353600-39359800	Weak transcription	Colonic Mucosa	Colon
13	chr19:39353600-39359800	Weak transcription	Fetal Lung	lung
14	chr19:39353600-39359800	Weak transcription	Lung	lung
15	chr19:39354000-39359000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr19:39354000-39359200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr19:39354000-39359600	Weak transcription	Right Atrium	heart
18	chr19:39354000-39359800	Weak transcription	Psoas Muscle	Psoas
19	chr19:39354000-39359800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr19:39354400-39359800	Weak transcription	Left Ventricle	heart
21	chr19:39355400-39359200	Weak transcription	Fetal Muscle Leg	muscle
22	chr19:39355800-39359600	Weak transcription	Fetal Thymus	thymus
23	chr19:39356000-39359000	Weak transcription	Fetal Intestine Large	intestine
24	chr19:39356000-39359200	Weak transcription	Pancreas	Pancrea
25	chr19:39356000-39359200	Weak transcription	Spleen	Spleen
26	chr19:39356000-39359600	Weak transcription	Hela-S3	cervix
27	chr19:39356000-39359800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr19:39356200-39359000	Enhancers	Primary B cells from cord blood	blood
29	chr19:39356200-39359200	Enhancers	Primary B cells from peripheral blood	blood
30	chr19:39356200-39359400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr19:39356200-39359600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr19:39356200-39359800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr19:39356200-39368000	Weak transcription	HepG2	liver
34	chr19:39356600-39359800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr19:39356800-39359000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr19:39356800-39359400	Weak transcription	Adipose Nuclei	Adipose
37	chr19:39356800-39359400	Weak transcription	A549	lung
38	chr19:39356800-39359600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr19:39356800-39359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr19:39356800-39359800	Weak transcription	HUVEC	blood vessel
41	chr19:39356800-39359800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr19:39356800-39359800	Weak transcription	NHEK	skin
43	chr19:39357000-39359000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr19:39357000-39359000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr19:39357000-39359000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr19:39357000-39359000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr19:39357000-39359200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr19:39357000-39359200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr19:39357000-39359400	Weak transcription	Stomach Mucosa	stomach
50	chr19:39357000-39359800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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