Variant report

Variant	rs28842622
Chromosome Location	chr19:39495091-39495092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10409359	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10411224	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415871	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416552	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11881837	1.00[EUR][1000 genomes]
rs17883377	1.00[EUR][1000 genomes]
rs28414024	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28698570	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58287865	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7250688	1.00[EUR][1000 genomes]
rs73545566	1.00[EUR][1000 genomes]
rs73930246	1.00[EUR][1000 genomes]
rs8103029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39492000-39497600	Weak transcription	Placenta	Placenta
5	chr19:39494600-39503400	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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