Variant report

Variant	rs73930246
Chromosome Location	chr19:39483661-39483662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39463902..39468166-chr19:39481620..39485046,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269190	Chromatin interaction

rs_ID	r²[population]
rs10411224	1.00[EUR][1000 genomes]
rs10415871	1.00[EUR][1000 genomes]
rs11881837	1.00[EUR][1000 genomes]
rs17883377	1.00[EUR][1000 genomes]
rs28414024	1.00[EUR][1000 genomes]
rs28698570	1.00[EUR][1000 genomes]
rs28842622	1.00[EUR][1000 genomes]
rs58287865	1.00[EUR][1000 genomes]
rs7250688	1.00[EUR][1000 genomes]
rs73545566	1.00[EUR][1000 genomes]
rs8103029	1.00[EUR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:39480200-39483800	Weak transcription	HSMMtube	muscle
4	chr19:39480200-39486600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
6	chr19:39481600-39484400	Enhancers	HMEC	breast
7	chr19:39481800-39484600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr19:39482200-39483800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:39482400-39483800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr19:39482400-39483800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr19:39482400-39484400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr19:39482600-39483800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr19:39483000-39484400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr19:39483200-39484400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr19:39483200-39484600	Enhancers	NHEK	skin
16	chr19:39483200-39484800	Enhancers	HUVEC	blood vessel
17	chr19:39483400-39484400	Enhancers	Osteobl	bone
18	chr19:39483600-39483800	Enhancers	Esophagus	oesophagus
19	chr19:39483600-39483800	Enhancers	A549	lung
20	chr19:39483600-39484200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr19:39483600-39484200	Enhancers	Hela-S3	cervix
22	chr19:39483600-39484400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr19:39483600-39484400	Enhancers	NHDF-Ad	bronchial

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