Variant report

Variant	rs11890379
Chromosome Location	chr2:141282923-141282924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11891453	0.88[AFR][1000 genomes]
rs13404083	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16844139	1.00[MEX][hapmap]
rs2380881	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2890534	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4511667	0.95[YRI][hapmap]
rs4589693	0.92[ASW][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap]
rs614390	1.00[MEX][hapmap]
rs6745901	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
2	nsv459518	chr2:141218933-141282923	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
3	nsv583191	chr2:141218933-141282923	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv433205	chr2:141270270-141285694	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141282200-141283000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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