Variant report
| Variant | rs2890534 |
|---|---|
| Chromosome Location | chr2:141280079-141280080 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs11890379 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs16844139 | 1.00[MEX][hapmap] |
| rs2380881 | 0.93[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap] |
| rs2890535 | 1.00[YRI][hapmap] |
| rs4589693 | 1.00[MEX][hapmap] |
| rs614390 | 1.00[MEX][hapmap] |
| rs6745901 | 1.00[MEX][hapmap] |
| rs7562323 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756334 | chr2:141166521-141285622 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| 2 | nsv459518 | chr2:141218933-141282923 | Enhancers Active TSS Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| 3 | nsv583191 | chr2:141218933-141282923 | Enhancers Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
| 4 | nsv433205 | chr2:141270270-141285694 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
