Variant report
| Variant | rs16844139 |
|---|---|
| Chromosome Location | chr2:141285622-141285623 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11890379 | 1.00[MEX][hapmap] |
| rs16844127 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16844143 | 0.93[YRI][hapmap] |
| rs16856025 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs2380881 | 1.00[MEX][hapmap] |
| rs2890534 | 1.00[MEX][hapmap] |
| rs4464215 | 0.92[YRI][hapmap] |
| rs4589693 | 1.00[MEX][hapmap] |
| rs614390 | 1.00[MEX][hapmap] |
| rs6745901 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756334 | chr2:141166521-141285622 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| 2 | nsv433205 | chr2:141270270-141285694 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
