Variant report

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:179265909..179268411-chr2:179277953..179280239,3	K562	blood:
2	chr2:179267152..179269291-chr2:179272709..179275311,2	MCF-7	breast:
3	chr2:179267337..179269344-chr2:179278165..179280176,2	MCF-7	breast:
4	chr2:179266943..179269711-chr2:179314799..179317524,2	MCF-7	breast:
5	chr2:179267170..179268852-chr2:179280741..179282900,2	MCF-7	breast:
6	chr2:179265909..179269338-chr2:179277953..179281149,5	K562	blood:
7	chr2:179267516..179271156-chr2:179271366..179274621,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OSBPL6-1	chr2:179266852-179267624	NONHSAT075742

No data

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55714261	0.94[AFR][1000 genomes]
rs56839647	1.00[AMR][1000 genomes]
rs56986537	1.00[AMR][1000 genomes]
rs59265316	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034347	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034350	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034356	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034366	1.00[AMR][1000 genomes]
rs73034371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034373	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034375	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034377	0.94[AFR][1000 genomes]
rs73034393	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036307	0.80[AFR][1000 genomes]
rs73036314	1.00[AMR][1000 genomes]
rs73036316	1.00[AMR][1000 genomes]
rs73036323	1.00[AMR][1000 genomes]
rs73036326	1.00[AMR][1000 genomes]
rs73036330	1.00[AMR][1000 genomes]
rs73036336	1.00[AMR][1000 genomes]
rs73036341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv834467	chr2:179258140-179430965	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179201800-179268200	Weak transcription	HSMM	muscle
2	chr2:179249000-179269000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:179251000-179268600	Weak transcription	NH-A	brain
4	chr2:179253200-179269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:179255000-179269200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:179255600-179268600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:179256000-179269200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:179256200-179269200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:179256200-179269200	Weak transcription	HMEC	breast
10	chr2:179261200-179268600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:179266800-179268600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:179267000-179268600	Enhancers	GM12878-XiMat	blood
13	chr2:179267200-179268200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:179267200-179268400	Weak transcription	HSMMtube	muscle
15	chr2:179267200-179268400	Weak transcription	NHDF-Ad	bronchial
16	chr2:179267600-179268600	Weak transcription	K562	blood

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