Variant report

Variant	rs73036326
Chromosome Location	chr2:179346483-179346484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr2:179344861-179346562	HEK293-T-REx	kidney:	n/a	n/a
2	WRNIP1	chr2:179346336-179346601	GM12878	blood:	n/a	n/a
3	MXI1	chr2:179344283-179346893	SK-N-SH	brain:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:74034038..74036346-chr2:179345014..179347619,2	MCF-7	breast:
2	chr2:179309273..179312087-chr2:179344521..179346573,2	MCF-7	breast:
3	chr2:179312045..179317660-chr2:179337933..179347437,24	MCF-7	breast:
4	chr2:179310863..179318324-chr2:179338966..179346608,29	K562	blood:
5	chr2:178128296..178129936-chr2:179344780..179347369,2	MCF-7	breast:
6	chr2:179314444..179318442-chr2:179340876..179346721,19	MCF-7	breast:
7	chr2:179344389..179346577-chr2:179386170..179387840,3	K562	blood:

No data

Variant related genes	Relation type
PLEKHA3	TF binding region
FKBP7	TF binding region
ENSG00000116044	Chromatin interaction
ENSG00000180228	Chromatin interaction
ENSG00000269926	Chromatin interaction
ENSG00000204311	Chromatin interaction
ENSG00000222043	Chromatin interaction
ENSG00000237298	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11893643	1.00[AMR][1000 genomes]
rs56839647	1.00[AMR][1000 genomes]
rs56986537	1.00[AMR][1000 genomes]
rs57496164	0.92[AFR][1000 genomes]
rs59265316	1.00[AMR][1000 genomes]
rs73034347	1.00[AMR][1000 genomes]
rs73034350	1.00[AMR][1000 genomes]
rs73034356	1.00[AMR][1000 genomes]
rs73034366	1.00[AMR][1000 genomes]
rs73034371	1.00[AMR][1000 genomes]
rs73034373	1.00[AMR][1000 genomes]
rs73034375	1.00[AMR][1000 genomes]
rs73034393	1.00[AMR][1000 genomes]
rs73036314	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036316	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036336	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036341	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834467	chr2:179258140-179430965	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179342000-179346600	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr2:179342200-179347200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr2:179342400-179346600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:179342400-179347000	Active TSS	HSMMtube	muscle
5	chr2:179342600-179346600	Active TSS	Aorta	Aorta
6	chr2:179342600-179346600	Active TSS	Brain Angular Gyrus	brain
7	chr2:179342600-179347000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:179342800-179347000	Active TSS	Left Ventricle	heart
9	chr2:179344600-179346600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:179344800-179346600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:179344800-179346800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:179344800-179347200	Active TSS	NHLF	lung
13	chr2:179344800-179347400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:179345000-179346600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:179345000-179346600	Active TSS	Fetal Muscle Trunk	muscle
16	chr2:179345600-179346600	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr2:179345600-179346600	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr2:179345600-179346600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr2:179345600-179346600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr2:179345600-179346600	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr2:179345600-179346800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:179345800-179346600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:179345800-179346600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr2:179345800-179346600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr2:179345800-179346800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:179345800-179346800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:179345800-179346800	Flanking Active TSS	Liver	Liver
28	chr2:179345800-179346800	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr2:179345800-179346800	Flanking Active TSS	Fetal Lung	lung
30	chr2:179345800-179346800	Flanking Active TSS	K562	blood
31	chr2:179345800-179347000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr2:179345800-179347200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr2:179345800-179347200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr2:179345800-179347200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr2:179345800-179347200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr2:179345800-179347200	Flanking Active TSS	HUVEC	blood vessel
37	chr2:179345800-179347200	Flanking Active TSS	Osteobl	bone
38	chr2:179345800-179347400	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr2:179345800-179347400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:179346000-179346600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr2:179346000-179346600	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr2:179346000-179346600	Flanking Active TSS	Fetal Stomach	stomach
43	chr2:179346000-179346800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr2:179346000-179346800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr2:179346000-179346800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr2:179346000-179346800	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr2:179346000-179346800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr2:179346000-179346800	Flanking Active TSS	Fetal Brain Female	brain
49	chr2:179346000-179346800	Flanking Active TSS	NHEK	skin
50	chr2:179346000-179347000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links