Variant report

Variant	rs73034366
Chromosome Location	chr2:179265758-179265759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11893643	1.00[AMR][1000 genomes]
rs55714261	0.81[AFR][1000 genomes]
rs56839647	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56986537	1.00[AMR][1000 genomes]
rs59265316	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034347	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034350	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034356	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034362	0.98[AFR][1000 genomes]
rs73034364	0.98[AFR][1000 genomes]
rs73034371	1.00[AMR][1000 genomes]
rs73034373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034375	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034377	0.81[AFR][1000 genomes]
rs73034393	1.00[AMR][1000 genomes]
rs73036314	1.00[AMR][1000 genomes]
rs73036316	1.00[AMR][1000 genomes]
rs73036323	1.00[AMR][1000 genomes]
rs73036326	1.00[AMR][1000 genomes]
rs73036330	1.00[AMR][1000 genomes]
rs73036336	1.00[AMR][1000 genomes]
rs73036341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv834467	chr2:179258140-179430965	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179201800-179268200	Weak transcription	HSMM	muscle
2	chr2:179249000-179269000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:179250800-179266000	Weak transcription	K562	blood
4	chr2:179251000-179268600	Weak transcription	NH-A	brain
5	chr2:179253200-179269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:179253600-179266000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:179255000-179269200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr2:179255600-179268600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:179256000-179269200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:179256200-179269200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:179256200-179269200	Weak transcription	HMEC	breast
12	chr2:179257400-179266800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:179261000-179266800	Weak transcription	NHDF-Ad	bronchial
14	chr2:179261200-179268600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:179262200-179267000	Weak transcription	GM12878-XiMat	blood
16	chr2:179262600-179266800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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