Variant report

Variant	rs11895096
Chromosome Location	chr2:128185018-128185019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:128183770-128186181	HepG2	liver:	n/a	n/a
2	POLR2A	chr2:128184963-128186760	HepG2	liver:	n/a	n/a
3	POLR2A	chr2:128185016-128186012	HepG2	liver:	n/a	n/a
4	POLR2A	chr2:128182379-128188565	HepG2	liver:	n/a	n/a
5	POLR2A	chr2:128185006-128185252	HepG2	liver:	n/a	n/a
6	POLR2A	chr2:128182272-128188076	HepG2	liver:	n/a	n/a
7	POLR2A	chr2:128184951-128187953	HepG2	liver:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:128178778..128180626-chr2:128184042..128185706,2	MCF-7	breast:
2	chr2:128182670..128185856-chr2:128186426..128188335,3	K562	blood:
3	chr2:128172111..128174190-chr2:128184627..128187597,2	MCF-7	breast:
4	chr2:128183243..128185185-chr2:128188049..128189643,2	MCF-7	breast:

No data

Variant related genes	Relation type
MIR4783	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11899966	1.00[AMR][1000 genomes]
rs34679970	1.00[AMR][1000 genomes]
rs56013308	1.00[AMR][1000 genomes]
rs56221313	1.00[AMR][1000 genomes]
rs6717862	1.00[AMR][1000 genomes]
rs7558970	1.00[AMR][1000 genomes]
rs7558971	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128180200-128186800	Strong transcription	Liver	Liver
2	chr2:128181000-128191000	Weak transcription	Aorta	Aorta
3	chr2:128181400-128185200	Weak transcription	Spleen	Spleen
4	chr2:128181400-128186200	Weak transcription	Esophagus	oesophagus
5	chr2:128181400-128194000	Weak transcription	Gastric	stomach
6	chr2:128181400-128195200	Weak transcription	Pancreas	Pancrea
7	chr2:128181400-128196000	Weak transcription	Lung	lung
8	chr2:128181400-128209800	Weak transcription	Right Atrium	heart
9	chr2:128181600-128185200	Weak transcription	Fetal Intestine Small	intestine
10	chr2:128181600-128187600	Strong transcription	HepG2	liver
11	chr2:128181600-128195000	Weak transcription	Fetal Intestine Large	intestine
12	chr2:128181600-128197200	Weak transcription	Brain Anterior Caudate	brain
13	chr2:128182600-128186200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:128182800-128189600	Weak transcription	A549	lung
15	chr2:128183000-128186000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:128183000-128197000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:128183800-128190800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:128184000-128187200	Strong transcription	Fetal Stomach	stomach
19	chr2:128184200-128190200	Weak transcription	Psoas Muscle	Psoas
20	chr2:128184600-128190000	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:128184600-128191400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:128184800-128195200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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