Variant report

Variant	rs34679970
Chromosome Location	chr2:128166582-128166583
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:128138155..128140236-chr2:128165831..128168252,2	K562	blood:
2	chr2:128165019..128167453-chr2:128175077..128177186,2	K562	blood:
3	chr2:128135797..128138082-chr2:128165864..128167455,2	MCF-7	breast:
4	chr2:128143825..128149210-chr2:128164212..128171253,11	K562	blood:
5	chr2:128138736..128141461-chr2:128164363..128167331,3	K562	blood:
6	chr2:128165727..128168463-chr2:128180072..128182532,2	K562	blood:
7	chr2:128162244..128164510-chr2:128166050..128167610,2	K562	blood:
8	chr2:128164915..128167319-chr2:128457695..128459898,2	MCF-7	breast:
9	chr2:128142542..128150787-chr2:128162650..128169241,18	MCF-7	breast:
10	chr2:128153413..128157536-chr2:128163810..128168101,4	K562	blood:
11	chr2:128164669..128167933-chr2:128169756..128171725,4	MCF-7	breast:
12	chr2:128166094..128168800-chr2:128177039..128179076,2	MCF-7	breast:
13	chr2:122288230..122290596-chr2:128165083..128168057,2	K562	blood:
14	chr2:128142687..128147811-chr2:128164209..128172701,12	MCF-7	breast:
15	chr2:128160244..128162105-chr2:128165459..128168318,2	K562	blood:
16	chr2:128143990..128147232-chr2:128162685..128167224,6	K562	blood:
17	chr2:128050299..128052497-chr2:128166123..128168807,2	K562	blood:
18	chr2:128162268..128164510-chr2:128165613..128167550,2	K562	blood:
19	chr2:128165876..128168486-chr2:128181109..128183047,2	MCF-7	breast:
20	chr2:128165398..128167231-chr2:128168499..128171120,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000264075	Chromatin interaction
ENSG00000236682	Chromatin interaction
ENSG00000173349	Chromatin interaction
ENSG00000163161	Chromatin interaction
ENSG00000169967	Chromatin interaction
ENSG00000264229	Chromatin interaction
ENSG00000074054	Chromatin interaction
ENSG00000115718	Chromatin interaction

rs_ID	r²[population]
rs11895096	1.00[AMR][1000 genomes]
rs11899966	1.00[AMR][1000 genomes]
rs56013308	1.00[AMR][1000 genomes]
rs56221313	1.00[AMR][1000 genomes]
rs6717862	1.00[AMR][1000 genomes]
rs7558970	1.00[AMR][1000 genomes]
rs7558971	1.00[AMR][1000 genomes]

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128164200-128166600	Enhancers	Fetal Thymus	thymus
2	chr2:128165000-128166600	Enhancers	Stomach Mucosa	stomach
3	chr2:128165400-128166600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr2:128165400-128166600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr2:128165400-128166600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr2:128165400-128166600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr2:128165400-128166600	Active TSS	Brain Anterior Caudate	brain
8	chr2:128165400-128166600	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr2:128165400-128166600	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr2:128165400-128166800	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr2:128165400-128166800	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr2:128165400-128166800	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr2:128165400-128168000	Weak transcription	Brain Substantia Nigra	brain
14	chr2:128165600-128166600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:128165600-128166800	Enhancers	Fetal Lung	lung
16	chr2:128165600-128168200	Weak transcription	NHEK	skin
17	chr2:128165800-128166600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:128165800-128166600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:128165800-128166600	Flanking Active TSS	Colonic Mucosa	Colon
20	chr2:128165800-128166600	Flanking Active TSS	Small Intestine	intestine
21	chr2:128165800-128166800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr2:128165800-128166800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr2:128166000-128166600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:128166000-128166600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr2:128166000-128166600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr2:128166000-128166600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr2:128166000-128166600	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr2:128166000-128166600	Flanking Active TSS	Fetal Muscle Trunk	muscle
29	chr2:128166000-128166600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr2:128166000-128166600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr2:128166200-128166600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
32	chr2:128166200-128166600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr2:128166200-128166600	Enhancers	Primary B cells from cord blood	blood
34	chr2:128166200-128166600	Enhancers	Primary B cells from peripheral blood	blood
35	chr2:128166200-128166600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr2:128166200-128166600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr2:128166200-128166600	Flanking Active TSS	Liver	Liver
38	chr2:128166200-128166600	Enhancers	Psoas Muscle	Psoas
39	chr2:128166200-128166600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr2:128166200-128166600	Enhancers	Spleen	Spleen
41	chr2:128166200-128166600	Flanking Active TSS	A549	lung
42	chr2:128166200-128166600	Enhancers	HUVEC	blood vessel
43	chr2:128166200-128166600	Enhancers	NHLF	lung
44	chr2:128166200-128166800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr2:128166200-128168400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:128166200-128168400	Weak transcription	Aorta	Aorta
47	chr2:128166200-128168400	Weak transcription	HSMMtube	muscle
48	chr2:128166200-128168600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:128166200-128168800	Weak transcription	Thymus	Thymus
50	chr2:128166200-128169200	Weak transcription	Fetal Kidney	kidney

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