Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86879247..86880832-chr2:86889496..86891894,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10165914	0.86[EUR][1000 genomes]
rs10176028	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10178968	0.86[EUR][1000 genomes]
rs1018311	0.91[ASN][1000 genomes]
rs10184617	0.85[EUR][1000 genomes]
rs10197478	0.86[EUR][1000 genomes]
rs10206802	0.86[EUR][1000 genomes]
rs11127049	0.86[EUR][1000 genomes]
rs13407663	0.86[EUR][1000 genomes]
rs1370452	0.86[EUR][1000 genomes]
rs1437615	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4423596	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58333815	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59818518	0.85[EUR][1000 genomes]
rs6547701	0.86[EUR][1000 genomes]
rs6709371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6758373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72934456	0.86[EUR][1000 genomes]
rs72934463	0.86[EUR][1000 genomes]
rs72934466	0.86[EUR][1000 genomes]
rs7425154	0.91[ASN][1000 genomes]
rs7564251	0.86[EUR][1000 genomes]
rs9808243	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1011590	chr2:86824181-86906114	Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86888200-86892200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:86888400-86892000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr2:86888800-86898200	Weak transcription	Ovary	ovary

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