Variant report
| Variant | rs1437615 |
|---|---|
| Chromosome Location | chr2:86872244-86872245 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10165914 | 0.86[EUR][1000 genomes] |
| rs10176028 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10178968 | 0.86[EUR][1000 genomes] |
| rs1018311 | 0.97[ASN][1000 genomes] |
| rs10184617 | 0.85[EUR][1000 genomes] |
| rs10197478 | 0.86[EUR][1000 genomes] |
| rs10206802 | 0.86[EUR][1000 genomes] |
| rs11127049 | 0.86[EUR][1000 genomes] |
| rs11895434 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13407663 | 0.86[EUR][1000 genomes] |
| rs1370452 | 0.86[EUR][1000 genomes] |
| rs4423596 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs58333815 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs59818518 | 0.85[EUR][1000 genomes] |
| rs6547701 | 0.86[EUR][1000 genomes] |
| rs6709371 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6758373 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72934456 | 0.86[EUR][1000 genomes] |
| rs72934463 | 0.86[EUR][1000 genomes] |
| rs72934466 | 0.86[EUR][1000 genomes] |
| rs7425154 | 0.97[ASN][1000 genomes] |
| rs7564251 | 0.86[EUR][1000 genomes] |
| rs9808243 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532724 | chr2:86622295-87086407 | Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011590 | chr2:86824181-86906114 | Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:86860400-86872400 | Weak transcription | Placenta | Placenta |
