Variant report
| Variant | rs6709371 |
|---|---|
| Chromosome Location | chr2:86867722-86867723 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:86858947..86862298-chr2:86867270..86869681,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10165914 | 0.84[EUR][1000 genomes] |
| rs10176028 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10178968 | 0.88[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1018311 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs10184617 | 0.83[EUR][1000 genomes] |
| rs10197478 | 0.84[EUR][1000 genomes] |
| rs10206802 | 0.84[EUR][1000 genomes] |
| rs1051386 | 0.80[CEU][hapmap] |
| rs11127049 | 0.84[EUR][1000 genomes] |
| rs11895434 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12997796 | 0.85[CHB][hapmap];1.00[YRI][hapmap] |
| rs13004867 | 0.85[CHB][hapmap] |
| rs13407663 | 0.84[EUR][1000 genomes] |
| rs1370452 | 0.84[EUR][1000 genomes] |
| rs1437615 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3020729 | 0.80[CEU][hapmap] |
| rs34353387 | 0.85[CHB][hapmap] |
| rs35594332 | 0.85[CHB][hapmap];1.00[YRI][hapmap] |
| rs4423596 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58333815 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs59818518 | 0.83[EUR][1000 genomes] |
| rs6547701 | 0.84[EUR][1000 genomes] |
| rs6758373 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72934456 | 0.84[EUR][1000 genomes] |
| rs72934463 | 0.84[EUR][1000 genomes] |
| rs72934466 | 0.84[EUR][1000 genomes] |
| rs7425154 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs7564251 | 0.84[EUR][1000 genomes] |
| rs9808243 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3412938 | chr2:86370969-86867936 | Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 77 gene(s) | inside rSNPs | diseases |
| 2 | nsv532724 | chr2:86622295-87086407 | Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| 3 | nsv1011590 | chr2:86824181-86906114 | Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:86860400-86872400 | Weak transcription | Placenta | Placenta |
| 2 | chr2:86867000-86868000 | Weak transcription | Psoas Muscle | Psoas |
