Variant report

Variant	rs11895483
Chromosome Location	chr2:187131897-187131898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10178888	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1037241	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11675633	0.85[EUR][1000 genomes]
rs11680486	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11690758	0.82[EUR][1000 genomes]
rs11692028	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11692347	0.81[EUR][1000 genomes]
rs11693797	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11898666	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11901465	0.86[EUR][1000 genomes]
rs11903027	0.81[EUR][1000 genomes]
rs13392819	0.85[EUR][1000 genomes]
rs13393891	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13414850	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13428033	0.88[EUR][1000 genomes]
rs1448848	0.85[EUR][1000 genomes]
rs1448849	0.85[EUR][1000 genomes]
rs1868383	0.86[EUR][1000 genomes]
rs2044683	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2084488	0.86[EUR][1000 genomes]
rs2084490	0.85[EUR][1000 genomes]
rs2197139	0.82[EUR][1000 genomes]
rs2370688	0.86[EUR][1000 genomes]
rs2887826	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35642346	0.86[EUR][1000 genomes]
rs55719959	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56137171	0.86[EUR][1000 genomes]
rs61226319	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61434493	0.86[EUR][1000 genomes]
rs6434167	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6709401	0.82[EUR][1000 genomes]
rs6716324	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6717525	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6728382	0.84[EUR][1000 genomes]
rs6731567	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6744717	0.85[EUR][1000 genomes]
rs72893450	0.91[EUR][1000 genomes]
rs72895449	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72897386	0.85[EUR][1000 genomes]
rs72899852	0.87[EUR][1000 genomes]
rs72905615	0.96[EUR][1000 genomes]
rs7579259	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7584137	0.82[EUR][1000 genomes]
rs7585889	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7588607	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9917285	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1002243	chr2:186692815-187150225	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv536077	chr2:186692815-187150225	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1003369	chr2:186980675-187133740	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1014726	chr2:187036909-187213113	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv536078	chr2:187036909-187213113	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3434695	chr2:187126495-187148916	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11895483	ZC3H15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187120200-187139000	Weak transcription	Gastric	stomach
2	chr2:187128400-187139800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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