Variant report

Variant	rs72897386
Chromosome Location	chr2:187339608-187339609
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10178888	0.88[EUR][1000 genomes]
rs10196955	0.81[AMR][1000 genomes]
rs10208643	0.81[AMR][1000 genomes]
rs1037241	0.96[EUR][1000 genomes]
rs11675633	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11675656	0.82[EUR][1000 genomes]
rs11678950	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11680486	0.96[EUR][1000 genomes]
rs11690758	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11692028	0.94[EUR][1000 genomes]
rs11692347	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11693797	0.96[EUR][1000 genomes]
rs11888432	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11895483	0.85[EUR][1000 genomes]
rs11898666	0.95[EUR][1000 genomes]
rs11901465	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11903027	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13392819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13393891	0.83[EUR][1000 genomes]
rs13394241	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13401304	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13428033	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1448848	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1448849	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827968	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16827994	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1868383	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1869031	0.81[EUR][1000 genomes]
rs2044683	0.93[EUR][1000 genomes]
rs2084488	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2084490	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2197139	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2370688	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2887826	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35642346	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55719959	0.96[EUR][1000 genomes]
rs56137171	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61226319	0.96[EUR][1000 genomes]
rs61434493	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6434167	0.92[EUR][1000 genomes]
rs6709401	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6716324	0.96[EUR][1000 genomes]
rs6717525	0.96[EUR][1000 genomes]
rs6724161	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6728382	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6731567	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6744717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72893450	0.92[EUR][1000 genomes]
rs72895449	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72901315	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72901322	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7579259	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7584137	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7585889	0.94[EUR][1000 genomes]
rs7588607	0.93[EUR][1000 genomes]
rs7603088	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9917285	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187320600-187347400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:187322600-187345400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:187328000-187350400	Weak transcription	Pancreas	Pancrea
4	chr2:187337000-187347000	Weak transcription	HepG2	liver
5	chr2:187337000-187348000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:187339000-187339800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:187339200-187339800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:187339400-187339800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr2:187339400-187339800	Enhancers	GM12878-XiMat	blood
10	chr2:187339400-187342600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:187339600-187339800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:187339600-187340200	ZNF genes & repeats	Fetal Intestine Small	intestine

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