Variant report

Variant	rs6724161
Chromosome Location	chr2:187337006-187337007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1037241	0.83[EUR][1000 genomes]
rs11675633	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11680486	0.83[EUR][1000 genomes]
rs11690758	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11692028	0.82[EUR][1000 genomes]
rs11692347	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11693797	0.83[EUR][1000 genomes]
rs11898666	0.83[EUR][1000 genomes]
rs11901465	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11903027	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13392819	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13428033	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1448848	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1448849	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16827968	0.85[AMR][1000 genomes]
rs1868383	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2044683	0.81[EUR][1000 genomes]
rs2084488	0.86[EUR][1000 genomes]
rs2084490	0.83[EUR][1000 genomes]
rs2197139	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2370688	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2887826	0.85[EUR][1000 genomes]
rs35642346	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55719959	0.83[EUR][1000 genomes]
rs56137171	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61226319	0.83[EUR][1000 genomes]
rs61434493	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6709401	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6716324	0.83[EUR][1000 genomes]
rs6717525	0.83[EUR][1000 genomes]
rs6728382	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6731567	0.83[EUR][1000 genomes]
rs6744717	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72893450	0.80[EUR][1000 genomes]
rs72895449	0.85[EUR][1000 genomes]
rs72897386	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7579259	0.85[EUR][1000 genomes]
rs7584137	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7585889	0.82[EUR][1000 genomes]
rs7588607	0.81[EUR][1000 genomes]
rs9917285	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187320600-187347400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:187322600-187345400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:187328000-187350400	Weak transcription	Pancreas	Pancrea
4	chr2:187336000-187339600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:187337000-187337200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:187337000-187337200	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr2:187337000-187347000	Weak transcription	HepG2	liver
8	chr2:187337000-187348000	Weak transcription	Duodenum Mucosa	Duodenum

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