Variant report

Variant	rs11895666
Chromosome Location	chr2:21646979-21646980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10490609	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10490610	0.89[ASN][1000 genomes]
rs12611495	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12611610	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12613395	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12613921	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12614377	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12615116	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12615149	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12616024	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12619415	0.89[ASN][1000 genomes]
rs12623465	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12623812	0.82[ASN][1000 genomes]
rs17042324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042346	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17042350	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17042355	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17042358	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17042361	0.89[ASN][1000 genomes]
rs17042368	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17042369	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17042388	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17042399	0.89[ASN][1000 genomes]
rs17042402	0.89[ASN][1000 genomes]
rs17042404	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55692465	1.00[ASN][1000 genomes]
rs60005484	0.89[ASN][1000 genomes]
rs60036630	1.00[ASN][1000 genomes]
rs61007556	0.89[ASN][1000 genomes]
rs73919263	1.00[ASN][1000 genomes]
rs73919265	1.00[ASN][1000 genomes]
rs73919285	1.00[ASN][1000 genomes]
rs73919288	1.00[ASN][1000 genomes]
rs73919289	1.00[ASN][1000 genomes]
rs73919290	1.00[ASN][1000 genomes]
rs73919295	0.89[ASN][1000 genomes]
rs73919296	0.89[ASN][1000 genomes]
rs73919299	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv2631	chr2:21606995-21652014	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21645200-21647200	Enhancers	HepG2	liver
2	chr2:21646400-21647400	Enhancers	NHLF	lung
3	chr2:21646600-21647400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:21646600-21647400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:21646800-21690600	Weak transcription	Aorta	Aorta

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