Variant report

Variant	rs12623812
Chromosome Location	chr2:21632790-21632791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21625273..21627610-chr2:21631659..21634157,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10490609	0.84[ASN][1000 genomes]
rs10490610	0.84[ASN][1000 genomes]
rs11895666	0.82[ASN][1000 genomes]
rs12611495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12611610	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12613395	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12613921	0.82[ASN][1000 genomes]
rs12614377	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12615116	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12615149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12616024	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12616733	0.87[ASN][1000 genomes]
rs12619415	0.84[ASN][1000 genomes]
rs12621032	0.90[ASN][1000 genomes]
rs12622330	0.92[ASN][1000 genomes]
rs12623465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12624085	0.92[ASN][1000 genomes]
rs17042271	0.87[ASN][1000 genomes]
rs17042324	0.82[ASN][1000 genomes]
rs17042327	0.82[ASN][1000 genomes]
rs17042331	0.82[ASN][1000 genomes]
rs17042333	0.82[ASN][1000 genomes]
rs17042337	0.82[ASN][1000 genomes]
rs17042346	0.82[ASN][1000 genomes]
rs17042350	0.84[ASN][1000 genomes]
rs17042355	0.84[ASN][1000 genomes]
rs17042358	0.84[ASN][1000 genomes]
rs17042361	0.84[ASN][1000 genomes]
rs17042368	0.84[ASN][1000 genomes]
rs17042369	0.84[ASN][1000 genomes]
rs17042388	0.84[ASN][1000 genomes]
rs17042399	0.84[ASN][1000 genomes]
rs17042402	0.84[ASN][1000 genomes]
rs17042404	0.84[ASN][1000 genomes]
rs55692465	0.82[ASN][1000 genomes]
rs58352420	0.92[ASN][1000 genomes]
rs59092457	0.92[ASN][1000 genomes]
rs60005484	0.84[ASN][1000 genomes]
rs60036630	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61007556	0.84[ASN][1000 genomes]
rs73919240	0.92[ASN][1000 genomes]
rs73919244	0.92[ASN][1000 genomes]
rs73919245	0.92[ASN][1000 genomes]
rs73919246	0.92[ASN][1000 genomes]
rs73919247	0.92[ASN][1000 genomes]
rs73919248	0.92[ASN][1000 genomes]
rs73919249	0.92[ASN][1000 genomes]
rs73919263	0.82[ASN][1000 genomes]
rs73919265	0.82[ASN][1000 genomes]
rs73919285	0.82[ASN][1000 genomes]
rs73919288	0.82[ASN][1000 genomes]
rs73919289	0.82[ASN][1000 genomes]
rs73919290	0.82[ASN][1000 genomes]
rs73919295	0.84[ASN][1000 genomes]
rs73919296	0.84[ASN][1000 genomes]
rs73919299	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv2631	chr2:21606995-21652014	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21582000-21634600	Weak transcription	Aorta	Aorta
2	chr2:21628400-21635600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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