Variant report

Variant	rs17042361
Chromosome Location	chr2:21677843-21677844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10490609	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10490610	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11895666	0.89[ASN][1000 genomes]
rs12611495	0.84[ASN][1000 genomes]
rs12611610	0.84[ASN][1000 genomes]
rs12613395	0.84[ASN][1000 genomes]
rs12613921	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12614377	0.84[ASN][1000 genomes]
rs12615116	0.84[ASN][1000 genomes]
rs12615149	0.84[ASN][1000 genomes]
rs12616024	0.84[ASN][1000 genomes]
rs12619415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12623465	0.84[ASN][1000 genomes]
rs12623812	0.84[ASN][1000 genomes]
rs1544858	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs17042271	0.92[CHB][hapmap]
rs17042275	0.92[CHB][hapmap]
rs17042324	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17042327	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17042331	0.89[ASN][1000 genomes]
rs17042333	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17042337	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17042346	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17042350	0.95[ASN][1000 genomes]
rs17042355	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17042358	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17042368	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17042369	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17042388	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17042399	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042402	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042404	1.00[ASN][1000 genomes]
rs35659083	1.00[EUR][1000 genomes]
rs55692465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59677792	1.00[EUR][1000 genomes]
rs60005484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60036630	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61007556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546581	1.00[EUR][1000 genomes]
rs6714370	0.84[CHB][hapmap]
rs73919255	1.00[EUR][1000 genomes]
rs73919263	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73919265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73919285	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73919288	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73919289	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73919290	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73919295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73919296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73919299	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7607516	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21646800-21690600	Weak transcription	Aorta	Aorta
2	chr2:21676200-21678400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:21676400-21678000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:21676400-21679200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:21676600-21678000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:21677400-21678000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:21677400-21678000	Enhancers	NHLF	lung
8	chr2:21677400-21679200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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