Variant report

Variant	rs1544858
Chromosome Location	chr2:21664687-21664688
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10490610	1.00[EUR][1000 genomes]
rs12613921	1.00[CHB][hapmap]
rs12619415	1.00[EUR][1000 genomes]
rs17042271	0.92[CHB][hapmap]
rs17042275	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs17042361	1.00[EUR][1000 genomes]
rs17042399	1.00[EUR][1000 genomes]
rs17042402	1.00[EUR][1000 genomes]
rs35659083	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55692465	1.00[EUR][1000 genomes]
rs59677792	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60005484	1.00[EUR][1000 genomes]
rs60036630	1.00[EUR][1000 genomes]
rs61007556	1.00[EUR][1000 genomes]
rs6546581	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6714370	0.84[CHB][hapmap]
rs73919255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73919256	0.81[AFR][1000 genomes]
rs73919263	1.00[EUR][1000 genomes]
rs73919265	1.00[EUR][1000 genomes]
rs73919285	1.00[EUR][1000 genomes]
rs73919288	1.00[EUR][1000 genomes]
rs73919289	1.00[EUR][1000 genomes]
rs73919290	1.00[EUR][1000 genomes]
rs73919295	1.00[EUR][1000 genomes]
rs73919296	1.00[EUR][1000 genomes]
rs73919299	1.00[EUR][1000 genomes]
rs7607516	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21646800-21690600	Weak transcription	Aorta	Aorta
2	chr2:21662600-21666400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:21664400-21665000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr2:21664400-21665000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:21664400-21665000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:21664600-21664800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:21664600-21665200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:21664600-21665200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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