Variant report
| Variant | rs7607516 |
|---|---|
| Chromosome Location | chr2:21663099-21663100 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10490610 | 1.00[EUR][1000 genomes] |
| rs12613921 | 1.00[CHB][hapmap] |
| rs12619415 | 1.00[EUR][1000 genomes] |
| rs1544858 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17042271 | 1.00[CHB][hapmap] |
| rs17042275 | 0.92[CHB][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap] |
| rs17042361 | 1.00[EUR][1000 genomes] |
| rs17042399 | 1.00[EUR][1000 genomes] |
| rs17042402 | 1.00[EUR][1000 genomes] |
| rs35659083 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs55692465 | 1.00[EUR][1000 genomes] |
| rs59677792 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs60005484 | 1.00[EUR][1000 genomes] |
| rs60036630 | 1.00[EUR][1000 genomes] |
| rs61007556 | 1.00[EUR][1000 genomes] |
| rs6546581 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6714370 | 0.84[CHB][hapmap];0.93[GIH][hapmap] |
| rs73919255 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73919263 | 1.00[EUR][1000 genomes] |
| rs73919265 | 1.00[EUR][1000 genomes] |
| rs73919285 | 1.00[EUR][1000 genomes] |
| rs73919288 | 1.00[EUR][1000 genomes] |
| rs73919289 | 1.00[EUR][1000 genomes] |
| rs73919290 | 1.00[EUR][1000 genomes] |
| rs73919295 | 1.00[EUR][1000 genomes] |
| rs73919296 | 1.00[EUR][1000 genomes] |
| rs73919299 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011486 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv535602 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21646800-21690600 | Weak transcription | Aorta | Aorta |
| 2 | chr2:21662600-21666400 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
