Variant report

Variant	rs11898086
Chromosome Location	chr2:211164763-211164764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10183204	1.00[AMR][1000 genomes]
rs10192256	1.00[AMR][1000 genomes]
rs10200097	1.00[AMR][1000 genomes]
rs10210462	1.00[AMR][1000 genomes]
rs11885370	1.00[AMR][1000 genomes]
rs11887542	0.93[AFR][1000 genomes]
rs11888495	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11888689	1.00[AMR][1000 genomes]
rs11892155	1.00[AMR][1000 genomes]
rs11897454	1.00[AMR][1000 genomes]
rs11898587	1.00[AMR][1000 genomes]
rs11899048	1.00[AMR][1000 genomes]
rs11901653	1.00[AMR][1000 genomes]
rs12992714	0.80[AFR][1000 genomes]
rs13020232	0.84[AFR][1000 genomes]
rs13395167	1.00[AMR][1000 genomes]
rs13405054	1.00[AMR][1000 genomes]
rs13414717	1.00[AMR][1000 genomes]
rs28621658	1.00[AMR][1000 genomes]
rs28668171	1.00[AMR][1000 genomes]
rs35264561	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv1803710	chr2:211073376-211173763	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012567	chr2:211087588-211315554	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv834520	chr2:211101265-211257068	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv875767	chr2:211119233-211334647	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1014508	chr2:211142855-211215068	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1010916	chr2:211147730-211205281	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211152800-211166400	Weak transcription	HSMMtube	muscle
2	chr2:211163400-211167400	Active TSS	Fetal Muscle Leg	muscle
3	chr2:211163400-211168600	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr2:211163400-211168800	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr2:211164400-211166400	Active TSS	Psoas Muscle	Psoas
6	chr2:211164600-211168800	Active TSS	Fetal Muscle Trunk	muscle

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