Variant report

Variant	rs11900923
Chromosome Location	chr2:73753748-73753749
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11884059	1.00[AMR][1000 genomes]
rs11884321	1.00[AMR][1000 genomes]
rs11888874	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11889925	0.80[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11891452	1.00[AMR][1000 genomes]
rs11893492	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11893870	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11895422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11895770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11898196	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899368	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899455	1.00[AMR][1000 genomes]
rs11899542	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11902529	1.00[AMR][1000 genomes]
rs1916106	1.00[AMR][1000 genomes]
rs34384696	1.00[AMR][1000 genomes]
rs35356857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56947864	1.00[AMR][1000 genomes]
rs6726794	1.00[AMR][1000 genomes]
rs6740441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7596893	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428051	chr2:73717032-74030067	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2757806	chr2:73717032-74078592	Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv2759060	chr2:73717032-74078592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv874267	chr2:73717656-73857002	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73713200-73757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:73717400-73757800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:73731600-73759000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:73731800-73807600	Weak transcription	Hela-S3	cervix
5	chr2:73736400-73761600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:73739400-73756400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:73740800-73753800	Weak transcription	Brain Angular Gyrus	brain
8	chr2:73740800-73757600	Weak transcription	Ovary	ovary
9	chr2:73741000-73755000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:73741000-73755600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:73741000-73756200	Weak transcription	Fetal Intestine Small	intestine
12	chr2:73741000-73756400	Weak transcription	Thymus	Thymus
13	chr2:73741000-73757200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:73741000-73757400	Weak transcription	Aorta	Aorta
15	chr2:73741000-73757400	Weak transcription	Pancreas	Pancrea
16	chr2:73741000-73757600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:73741000-73757800	Weak transcription	Gastric	stomach
18	chr2:73741000-73758800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:73741000-73759400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:73741000-73767400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:73741200-73757400	Weak transcription	Fetal Stomach	stomach
22	chr2:73741200-73757600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr2:73744200-73759000	Weak transcription	HSMMtube	muscle
24	chr2:73744200-73799800	Weak transcription	NH-A	brain
25	chr2:73744600-73764400	Weak transcription	HSMM	muscle
26	chr2:73744800-73756600	Weak transcription	Fetal Brain Male	brain
27	chr2:73745400-73756200	Weak transcription	Fetal Thymus	thymus
28	chr2:73745600-73756400	Weak transcription	A549	lung
29	chr2:73745600-73757400	Weak transcription	Placenta	Placenta
30	chr2:73746000-73765200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr2:73746800-73757400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr2:73747800-73757600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr2:73747800-73786800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr2:73748000-73758800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr2:73748000-73762000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr2:73748200-73756200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:73748600-73753800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr2:73748800-73755600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr2:73749400-73756600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr2:73749400-73757800	Weak transcription	Left Ventricle	heart
41	chr2:73749600-73756400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr2:73750600-73753800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr2:73751800-73754200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr2:73751800-73759400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr2:73752000-73754200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr2:73752600-73753800	Weak transcription	Dnd41	blood
47	chr2:73752600-73759800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr2:73752600-73762600	Weak transcription	Fetal Kidney	kidney
49	chr2:73752800-73753800	Weak transcription	Primary T cells from cord blood	blood
50	chr2:73752800-73753800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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