Variant report

Variant	rs6740441
Chromosome Location	chr2:73662650-73662651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73613233..73615069-chr2:73661651..73663882,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11884321	1.00[AMR][1000 genomes]
rs11888874	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11889925	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11891452	1.00[AMR][1000 genomes]
rs11893492	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11893870	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11895422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11895770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11898196	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899368	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899455	1.00[AMR][1000 genomes]
rs11899542	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11900923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11902529	1.00[AMR][1000 genomes]
rs1916106	1.00[AMR][1000 genomes]
rs34384696	1.00[AMR][1000 genomes]
rs35356857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56947864	1.00[AMR][1000 genomes]
rs6726794	1.00[AMR][1000 genomes]
rs7596893	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73622800-73662800	Weak transcription	Right Ventricle	heart
2	chr2:73626800-73662800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:73626800-73662800	Weak transcription	Aorta	Aorta
4	chr2:73626800-73663400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:73626800-73664000	Weak transcription	Thymus	Thymus
6	chr2:73627400-73664400	Weak transcription	Pancreas	Pancrea
7	chr2:73628800-73663000	Weak transcription	Hela-S3	cervix
8	chr2:73633200-73662800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:73634000-73663200	Weak transcription	Psoas Muscle	Psoas
10	chr2:73634400-73662800	Weak transcription	Esophagus	oesophagus
11	chr2:73637600-73662800	Weak transcription	Fetal Stomach	stomach
12	chr2:73637800-73663600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr2:73637800-73676200	Weak transcription	Fetal Brain Male	brain
14	chr2:73639200-73675400	Weak transcription	HMEC	breast
15	chr2:73642200-73666000	Weak transcription	NHLF	lung
16	chr2:73643400-73663000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr2:73644600-73662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:73645400-73675200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:73645600-73663000	Weak transcription	NHDF-Ad	bronchial
20	chr2:73645600-73675200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:73645600-73676600	Weak transcription	NH-A	brain
22	chr2:73645600-73685600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr2:73645800-73662800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:73646000-73664000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr2:73646200-73662800	Weak transcription	Brain Anterior Caudate	brain
26	chr2:73646400-73675200	Weak transcription	Osteobl	bone
27	chr2:73646600-73662800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr2:73646600-73663400	Weak transcription	Fetal Heart	heart
29	chr2:73646600-73664200	Weak transcription	Small Intestine	intestine
30	chr2:73646800-73662800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:73646800-73663200	Weak transcription	HSMMtube	muscle
32	chr2:73647000-73684000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr2:73648400-73663200	Weak transcription	Fetal Kidney	kidney
34	chr2:73649400-73663000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr2:73649600-73668000	Weak transcription	Gastric	stomach
36	chr2:73650200-73662800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr2:73652000-73662800	Weak transcription	Fetal Thymus	thymus
38	chr2:73652000-73678400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr2:73652200-73662800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr2:73652200-73688400	Weak transcription	Colonic Mucosa	Colon
41	chr2:73652400-73663200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:73653600-73662800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr2:73653800-73662800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr2:73653800-73662800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr2:73654000-73662800	Weak transcription	Fetal Muscle Leg	muscle
46	chr2:73654000-73663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:73654200-73662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr2:73654400-73664200	Weak transcription	Left Ventricle	heart
49	chr2:73657000-73662800	Weak transcription	Colon Smooth Muscle	Colon
50	chr2:73657200-73675400	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links