Variant report
| Variant | rs11901012 |
|---|---|
| Chromosome Location | chr2:182947680-182947681 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:182885247..182888264-chr2:182945298..182948359,3 | MCF-7 | breast: | |
| 2 | chr2:182753389..182769521-chr2:182932013..182949608,79 | MCF-7 | breast: | |
| 3 | chr2:182753988..182769660-chr2:182938612..182954194,58 | MCF-7 | breast: | |
| 4 | chr2:182792632..182794412-chr2:182945840..182948376,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000260742 | Chromatin interaction |
| ENSG00000138434 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10165500 | 1.00[EUR][1000 genomes] |
| rs10171911 | 1.00[EUR][1000 genomes] |
| rs10174618 | 1.00[EUR][1000 genomes] |
| rs10181570 | 1.00[EUR][1000 genomes] |
| rs10182266 | 1.00[EUR][1000 genomes] |
| rs10184869 | 1.00[EUR][1000 genomes] |
| rs10185985 | 1.00[EUR][1000 genomes] |
| rs10194823 | 1.00[EUR][1000 genomes] |
| rs10197132 | 1.00[EUR][1000 genomes] |
| rs10204911 | 1.00[EUR][1000 genomes] |
| rs13383296 | 1.00[EUR][1000 genomes] |
| rs13388735 | 1.00[EUR][1000 genomes] |
| rs13388823 | 1.00[EUR][1000 genomes] |
| rs13399478 | 1.00[EUR][1000 genomes] |
| rs13400663 | 1.00[EUR][1000 genomes] |
| rs13403591 | 1.00[EUR][1000 genomes] |
| rs13406342 | 1.00[EUR][1000 genomes] |
| rs13416498 | 1.00[EUR][1000 genomes] |
| rs13432152 | 1.00[EUR][1000 genomes] |
| rs1427330 | 1.00[EUR][1000 genomes] |
| rs16822895 | 1.00[EUR][1000 genomes] |
| rs16867505 | 1.00[EUR][1000 genomes] |
| rs1864853 | 1.00[EUR][1000 genomes] |
| rs56915855 | 1.00[EUR][1000 genomes] |
| rs58264204 | 1.00[EUR][1000 genomes] |
| rs59076821 | 1.00[EUR][1000 genomes] |
| rs6433964 | 1.00[EUR][1000 genomes] |
| rs6740124 | 1.00[EUR][1000 genomes] |
| rs6760081 | 1.00[EUR][1000 genomes] |
| rs73977312 | 1.00[EUR][1000 genomes] |
| rs73977325 | 1.00[EUR][1000 genomes] |
| rs73977328 | 1.00[EUR][1000 genomes] |
| rs7561341 | 1.00[EUR][1000 genomes] |
| rs7567023 | 1.00[EUR][1000 genomes] |
| rs7574051 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875477 | chr2:182938377-183086478 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:182947200-182950200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
