Variant report

Variant	rs6760081
Chromosome Location	chr2:183096406-183096407
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10165500	1.00[EUR][1000 genomes]
rs10171911	1.00[EUR][1000 genomes]
rs10174618	1.00[EUR][1000 genomes]
rs10181570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10182266	1.00[EUR][1000 genomes]
rs10184869	1.00[EUR][1000 genomes]
rs10185985	1.00[EUR][1000 genomes]
rs10197132	1.00[EUR][1000 genomes]
rs10204911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11901012	1.00[EUR][1000 genomes]
rs13383296	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13388735	1.00[EUR][1000 genomes]
rs13388823	1.00[EUR][1000 genomes]
rs13399478	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13400663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13403591	1.00[EUR][1000 genomes]
rs13406342	1.00[EUR][1000 genomes]
rs13416498	1.00[EUR][1000 genomes]
rs13432152	1.00[EUR][1000 genomes]
rs16822895	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16822899	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16823102	1.00[EUR][1000 genomes]
rs1864853	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58264204	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59076821	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6433964	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6740124	1.00[EUR][1000 genomes]
rs73038165	1.00[EUR][1000 genomes]
rs73977312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73977325	1.00[EUR][1000 genomes]
rs73977328	1.00[EUR][1000 genomes]
rs7561341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7567023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7574051	1.00[EUR][1000 genomes]
rs7578466	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1805452	chr2:183086478-183107270	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1809585	chr2:183086478-183107270	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1007075	chr2:183096336-183103221	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183085400-183096600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:183088000-183105800	Weak transcription	Aorta	Aorta
3	chr2:183088000-183106000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:183094200-183098200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:183095800-183103000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:183095800-183106000	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:183096000-183102400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:183096000-183103600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:183096200-183096800	Weak transcription	Osteobl	bone

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