Variant report

Variant	rs73038165
Chromosome Location	chr2:183173830-183173831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183172864..183175852-chr2:183181543..183183109,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10165500	1.00[EUR][1000 genomes]
rs10171911	1.00[EUR][1000 genomes]
rs10174618	1.00[EUR][1000 genomes]
rs10181570	1.00[EUR][1000 genomes]
rs10182266	1.00[EUR][1000 genomes]
rs10184869	1.00[EUR][1000 genomes]
rs10185985	1.00[EUR][1000 genomes]
rs10197132	1.00[EUR][1000 genomes]
rs10204911	1.00[EUR][1000 genomes]
rs13383296	1.00[EUR][1000 genomes]
rs13388735	1.00[EUR][1000 genomes]
rs13388823	1.00[EUR][1000 genomes]
rs13399478	1.00[EUR][1000 genomes]
rs13400663	1.00[EUR][1000 genomes]
rs13403591	1.00[EUR][1000 genomes]
rs13406342	1.00[EUR][1000 genomes]
rs13416498	1.00[EUR][1000 genomes]
rs13432152	1.00[EUR][1000 genomes]
rs16822895	1.00[EUR][1000 genomes]
rs16823102	1.00[EUR][1000 genomes]
rs1864853	1.00[EUR][1000 genomes]
rs58264204	1.00[EUR][1000 genomes]
rs59076821	1.00[EUR][1000 genomes]
rs6433964	1.00[EUR][1000 genomes]
rs6740124	1.00[EUR][1000 genomes]
rs6760081	1.00[EUR][1000 genomes]
rs73977312	1.00[EUR][1000 genomes]
rs73977325	1.00[EUR][1000 genomes]
rs73977328	1.00[EUR][1000 genomes]
rs7561341	1.00[EUR][1000 genomes]
rs7567023	1.00[EUR][1000 genomes]
rs7574051	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv459955	chr2:183170516-183204369	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv459956	chr2:183170516-183204369	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv583916	chr2:183170516-183204369	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183158800-183183200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:183168400-183174400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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