Variant report

Variant	rs13406342
Chromosome Location	chr2:183125900-183125901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10165500	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10171911	1.00[EUR][1000 genomes]
rs10174618	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs10181570	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10182266	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10184869	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10185985	1.00[EUR][1000 genomes]
rs10197132	1.00[EUR][1000 genomes]
rs10204911	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11901012	1.00[EUR][1000 genomes]
rs13383296	0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13388735	0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13388823	1.00[EUR][1000 genomes]
rs13399478	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs13400663	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13403591	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13416498	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13432152	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16822895	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs16822899	0.95[YRI][hapmap]
rs16823102	1.00[EUR][1000 genomes]
rs1864853	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58264204	1.00[EUR][1000 genomes]
rs59076821	1.00[EUR][1000 genomes]
rs6433964	1.00[EUR][1000 genomes]
rs6740124	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs6760081	1.00[EUR][1000 genomes]
rs73038165	1.00[EUR][1000 genomes]
rs73977312	1.00[EUR][1000 genomes]
rs73977325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73977328	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7561341	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7567023	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7574051	1.00[EUR][1000 genomes]
rs7578466	0.95[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183106400-183138400	Weak transcription	Aorta	Aorta
2	chr2:183113600-183138800	Weak transcription	Fetal Stomach	stomach
3	chr2:183124200-183126000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:183124600-183128600	Weak transcription	Gastric	stomach
5	chr2:183124800-183130400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:183125200-183127000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:183125400-183130000	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:183125800-183127800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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