Variant report

Variant	rs11902497
Chromosome Location	chr2:72316637-72316638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11902358	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11902394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13406776	0.92[ASN][1000 genomes]
rs1400681	0.92[ASN][1000 genomes]
rs17007725	0.92[ASN][1000 genomes]
rs17007727	0.92[ASN][1000 genomes]
rs17665497	0.92[ASN][1000 genomes]
rs17722207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852841	0.92[ASN][1000 genomes]
rs4852844	0.92[ASN][1000 genomes]
rs4852847	0.92[ASN][1000 genomes]
rs4852852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852854	1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs56808687	0.92[ASN][1000 genomes]
rs59496509	0.92[ASN][1000 genomes]
rs72904426	0.92[ASN][1000 genomes]
rs72904430	0.92[ASN][1000 genomes]
rs72904452	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1004274	chr2:72314859-72324310	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72313600-72319200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:72314200-72316800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:72316600-72317800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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