Variant report

Variant	rs13406776
Chromosome Location	chr2:72305463-72305464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10195125	0.80[AMR][1000 genomes]
rs11902394	0.92[ASN][1000 genomes]
rs11902497	0.92[ASN][1000 genomes]
rs1400681	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17007725	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007727	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17665497	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722207	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs4852841	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4852844	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852847	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852852	0.92[ASN][1000 genomes]
rs56808687	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59496509	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904426	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904430	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904452	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13406776	MMP20	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72302000-72307400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:72304600-72305800	Flanking Active TSS	HepG2	liver
3	chr2:72304600-72306200	Enhancers	Liver	Liver
4	chr2:72305000-72306000	Weak transcription	Pancreas	Pancrea
5	chr2:72305000-72310200	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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