Variant report

Variant	rs10195125
Chromosome Location	chr2:72302711-72302712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10183844	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13406776	0.80[AMR][1000 genomes]
rs1400682	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17007725	0.83[AMR][1000 genomes]
rs17007727	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17007729	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852284	0.82[ASN][1000 genomes]
rs4852847	0.85[AMR][1000 genomes]
rs4852848	0.96[ASN][1000 genomes]
rs4852850	0.96[ASN][1000 genomes]
rs4852854	1.00[CHB][hapmap]
rs56808687	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57874021	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59317730	0.87[ASN][1000 genomes]
rs59496509	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72904426	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72904430	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72904452	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10195125	SMYD5	cis	cerebellum	SCAN
rs10195125	CCT7	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72301400-72303600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:72301600-72303000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:72302000-72307400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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