Variant report

Variant	rs59317730
Chromosome Location	chr2:72318085-72318086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10183844	0.87[ASN][1000 genomes]
rs10195125	0.87[ASN][1000 genomes]
rs1400682	0.87[ASN][1000 genomes]
rs17007729	0.87[ASN][1000 genomes]
rs4852284	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4852848	0.91[ASN][1000 genomes]
rs4852850	0.91[ASN][1000 genomes]
rs4852854	0.91[ASN][1000 genomes]
rs57874021	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1004274	chr2:72314859-72324310	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72313600-72319200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:72316800-72318200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:72317800-72319000	Weak transcription	Hela-S3	cervix
4	chr2:72317800-72320200	Enhancers	Duodenum Mucosa	Duodenum
5	chr2:72318000-72318200	Enhancers	Fetal Intestine Large	intestine
6	chr2:72318000-72318600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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