Variant report

Variant	rs4852841
Chromosome Location	chr2:72270281-72270282
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11902394	0.92[ASN][1000 genomes]
rs11902497	0.92[ASN][1000 genomes]
rs13406776	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1400681	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400682	0.84[AMR][1000 genomes]
rs17007725	1.00[ASN][1000 genomes]
rs17007727	1.00[ASN][1000 genomes]
rs17665497	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17722207	0.92[ASN][1000 genomes]
rs4852844	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4852847	1.00[ASN][1000 genomes]
rs4852852	0.92[ASN][1000 genomes]
rs56808687	1.00[ASN][1000 genomes]
rs59496509	1.00[ASN][1000 genomes]
rs72904426	1.00[ASN][1000 genomes]
rs72904430	1.00[ASN][1000 genomes]
rs72904452	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874261	chr2:72242013-72270790	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv874262	chr2:72242013-72279514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3584760	chr2:72249991-72271489	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv874263	chr2:72251751-72279514	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72269600-72280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links